Hanalyzer: A 3R System

The Hanalyzer is an open-source data integration system designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction techniques, semantic data integration, and reasoning and facilitates network visualization. The Hanalyzer was developed in the Center for Computational Pharmacology at the University of Colorado Denver.

SM Leach, H Tipney, W Feng, WA Baumgartner Jr, P Kasliwal, RP Schuyler, T Williams, RA Spritz, and L Hunter. Biomedical Discovery Acceleration, with Applications to Craniofacial Development. PLoS Comput Bio 2009, 5(3): e1000215. doi:10.1371/journal.pcbi.1000215 [Link] [PubMed]

Demos

• YouTube demo illustrating use of the Hanalyzer to analyze a complex craniofacial microarray dataset

Tutorials

• Exploring the network from the PLoS paper
• Integrating your high-throughput mouse data with an up-to-date knowledge network
• COMING SOON: Integrating your high-throughput mouse data with a pre-computed knowledge network
• COMING SOON: Integrating your high-throughput human data with an up-to-date-knowledge network
• COMING SOON: Extending the code: Software Developers' Corner

The Hanalyzer source code and binaries can be downloaded on the Download Page.

Contact Information