Hanalyzer Cytoscape Plugins

Cytoscape Plugins

A number of Cytoscape (http://www.cytoscape.org/) plugins have been developed to aid the user in analyzing the networks produced by the Hanalyzer. A brief description of each is shown below.

The preferred installation method for all plugins is via the Cytoscape user interface via the Plugins --> Manage Plugins menu. Alternatively, a compiled distribution as well as source code for each plugin is available to download in the cytoscape-plugins package.

NOTE: If you want to use the Manage Plugins feature you must use Cytoscape v2.6.x.


(1) SM Leach, H Tipney, W Feng, WA Baumgartner Jr, P Kasliwal, RP Schuyler, T Williams, RA Spritz, and L Hunter. Biomedical Discovery Acceleration, with Applications to Craniofacial Development. PLoS Comput Bio 2009, 5(3): e1000215. doi:10.1371/journal.pcbi.1000215 [Link] [PubMed]

(2) H Tipney, RP Schuyler, and L Hunter. Consistent visualizations of changing knowledge. AMIA Summit on Translational Bioinformatics 2009, San Francisco.